Development manual for vsearch 2.32.0, built from the dev branch: it describes changes that are not released yet. The manual for the current release is published separately.

Commands

One page per vsearch command (section 1 of the manual).

---

Table of contents

• vsearch-allpairs_global(1)
• vsearch-chimeras_denovo(1)
• vsearch-cluster_fast(1)
• vsearch-cluster_size(1)
• vsearch-cluster_smallmem(1)
• vsearch-cluster_unoise(1)
• vsearch-cut(1)
• vsearch-derep_fulllength(1)
• vsearch-derep_id(1)
• vsearch-derep_prefix(1)
• vsearch-derep_smallmem(1)
• vsearch-fasta2fastq(1)
• vsearch-fastq_chars(1)
• vsearch-fastq_convert(1)
• vsearch-fastq_eestats(1)
• vsearch-fastq_eestats2(1)
• vsearch-fastq_filter(1)
• vsearch-fastq_join(1)
• vsearch-fastq_mergepairs(1)
• vsearch-fastq_stats(1)
• vsearch-fastx_filter(1)
• vsearch-fastx_getseq(1)
• vsearch-fastx_getseqs(1)
• vsearch-fastx_getsubseq(1)
• vsearch-fastx_mask(1)
• vsearch-fastx_revcomp(1)
• vsearch-fastx_subsample(1)
• vsearch-fastx_syncpairs(1)
• vsearch-fastx_uniques(1)
• vsearch-help(1)
• vsearch-makeudb_usearch(1)
• vsearch-maskfasta(1)
• vsearch-orient(1)
• vsearch-rereplicate(1)
• vsearch-scramble(1)
• vsearch-search_exact(1)
• vsearch-sff_convert(1)
• vsearch-shuffle(1)
• vsearch-sintax(1)
• vsearch-sortbylength(1)
• vsearch-sortbysize(1)
• vsearch-uchime2_denovo(1)
• vsearch-uchime3_denovo(1)
• vsearch-uchime_denovo(1)
• vsearch-uchime_ref(1)
• vsearch-udb2fasta(1)
• vsearch-udbinfo(1)
• vsearch-udbstats(1)
• vsearch-usearch_global(1)
• vsearch-version(1)